PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_E294922A9.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 379aa    MW: 41048.8 Da    PI: 9.1918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_E294922A9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.3e-29307365259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D y+WrKYGqK++kgs++pr+YYrC+s  +Cp++k+ver++ d  ++++tYe++Hnh 
  Traes_5BL_E294922A9.2 307 SDSYSWRKYGQKPIKGSPHPRGYYRCSSIkDCPARKHVERCRGDAGMLIVTYENDHNHA 365
                            69************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.8E-7251304IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-32295367IPR003657WRKY domain
PROSITE profilePS5081130.274301367IPR003657WRKY domain
SuperFamilySSF1182903.14E-26304367IPR003657WRKY domain
SMARTSM007741.9E-35306366IPR003657WRKY domain
PfamPF031069.6E-25308364IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEGVEEANRA AVVSCKRLVA RLSLSAGDPF RLAAVAAETE EAVSRFSKVV NILGNRVGHA  60
RARVGRRSSP AGDPIARCLL EYHPPPPVPY CPPASAPQLH GSSSSTPAPP TPLKQMAVPV  120
AAAAAPCATD RDMFFQTPLL DLSGCSVTPA SMPPCRSTAR EFPQQQPAPP QKRMLEQQQR  180
PASSDNKRFH FEPKPASEKP FHIEIPAARS GKEPEVITFS FDNSVCTSSA ATSFFTNMSS  240
QLISMSETSA CAPASRKAAH KADDDGKCHC PKKKSVPVAY AIDLLKPREK RVVRMPAVSD  300
KVADIPSDSY SWRKYGQKPI KGSPHPRGYY RCSSIKDCPA RKHVERCRGD AGMLIVTYEN  360
DHNHAQPLDL ATLTANSEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-193043671274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3700431e-148AK370043.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752047.11e-120PREDICTED: protein WRKY1-like
TrEMBLW5FJD60.0W5FJD6_WHEAT; Uncharacterized protein
STRINGMLOC_67268.21e-127(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-44WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]